Scientific publications

Sonnal Lohia, Justyna Siwy, Emmanouil Mavrogeorgis, Susanne Eder, Stefanie Thöni, Gert Mayer, Harald Mischak, Antonia Vlahou, Vera Jankowski

Exploratory Study Analyzing the Urinary Peptidome of T2DM Patients Suggests Changes in ECM but Also Inflammatory and Metabolic Pathways Following GLP-1R Agonist Treatment

Int J Mol Sci 2023 Aug 31;24(17):13540. doi: 10.3390/ijms241713540

Hratch Baghdassarian, Daniel Dimitrov, Erick Armingol, Julio Saez-Rodriguez, Nathan E. Lewis

Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples

Biorxiv https://doi.org/10.1101/2023.04.28.538731

Sonnal Lohia, Agnieszka Latosinska, Jerome Zoidakis, Manousos Makridakis, Harald Mischak, Griet Glorieux, Antonia Vlahou and Vera Jankowski

Glycosylation Analysis of Urinary Peptidome Highlights IGF2 Glycopeptides in Association with CKD

Int. J. Mol. Sci. 2023, 24(6), 5402; https://doi.org/10.3390/ijms24065402

Mara Lauriola, Ricard Farré, Pieter Evenepoel, Saskia Adriana Overbeek and Björn Meijers

Food-Derived Uremic Toxins in Chronic Kidney Disease

Toxins 2023, 15(2), 116; https://doi.org/10.3390/toxins15020116

Shruti Bhargava, Erik Merckelbach, Heidi Noels, Ashima Vohra and Joachim Jankowski

Homeostasis in the Gut Microbiota in Chronic Kidney Disease

Toxins 2022, 14(10), 648; https://doi.org/10.3390/toxins14100648

Hubert Krukowski, Sophie Valkenburg, Avra-Melina Madella, Johan Garssen, Jeroen van Bergenhenegouwen, Saskia Adriana Overbeek, Geert R. B. Huys, Jeroen Raes & Griet Glorieux

Gut microbiome studies in CKD: opportunities, pitfalls and therapeutic potential

Nature Reviews Nephrology (2022)

Avra Melina Madella, Jeroen Van Bergenhenegouwen, Johan Garssen, Rosalinde Masereeuw, Saskia Adriana Overbeek

Microbial-Derived Tryptophan Catabolites, Kidney Disease and Gut Inflammation

PMID: 36136583 PMCID: PMC9505404 DOI: 10.3390/toxins14090645

Piotr Bartochowski, Nathalie Gayrard, Stéphanie Bornes, Céline Druart, Angel Argilés, Magali Cordaillat-Simmons and Flore Duranton

Gut–Kidney Axis Investigations in Animal Models of Chronic Kidney Disease

Toxins 2022, 14(9), 626

Chiara Favero,Laura Giordano,Silvia Maria Mihaila,Rosalinde Masereeuw,Alberto Ortiz and Maria Dolores Sanchez-Niño

Postbiotics and Kidney Disease

Toxins 2022, 14(9), 623; https://doi.org/10.3390/toxins14090623

Daniel Dimitrov, Dénes Türei, Martin Garrido-Rodriguez, Paul L. Burmedi, James S. Nagai, Charlotte Boys, Ricardo O. Ramirez Flores, Hyojin Kim, Bence Szalai, Ivan G. Costa, Alberto Valdeolivas, Aurélien Dugourd & Julio Saez-Rodriguez

Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Nature Communications volume 13, Article number: 3224 (2022)

Sonnal Lohia, Antonia Vlahou and Jerome Zoidakis

Microbiome in Chronic Kidney Disease (CKD): An Omics Perspective

Toxins 2022, 14, 176. DOI: 10.3390/toxins14030176

Annapaola Coppola, Carmela Vigorito, Patrizia Lombari, Yuselys García Martínez, Margherita Borriello, Francesco Trepiccione, Diego Ingrosso and Alessandra F. Perna

Uremic Toxin Lanthionine Induces Endothelial Cell Mineralization In Vitro

Biomedicines 2022, 10, 444.

https://doi.org/10.3390/biomedicines10020444

Emmanouil Mavrogeorgis, Harald Mischak, Agnieszka Latosinska, Antonia Vlahou, Joost P. Schanstra, Justyna Siwy, Vera Jankowski, Joachim Beige and Joachim Jankowski

Collagen-Derived Peptides in CKD: A Link to Fibrosis

Toxins 2022, 14, 10 10.3390/toxins14010010

Emmanouil Mavrogeorgis, Harald Mischak, Agnieszka Latosinska, Justyna Siwy, Vera Jankowski and Joachim Jankowski

Reproducibility Evaluation of Urinary Peptide Detection Using CE-MS

Molecules 2021 , 26(23), 7260; https://doi.org/10.3390/molecules26237260

Mieke Steenbeke, Sophie Valkenburg, Tessa Gryp, Wim Van Biesen, Joris R. Delanghe, Marijn M. Speeckaert and Griet Glorieux

Gut Microbiota and Their Derived Metabolites, a Search for Potential Targets to Limit Accumulation of Protein-Bound Uremic Toxins in Chronic Kidney Disease

Toxins 2021, 13, 809. https://doi.org/10.3390/toxins13110809

Sophie Valkenburg, Griet Glorieux and Raymond Vanholder

Uremic Toxins and Cardiovascular System. Cardiology clinics.

Cardiol Clin. 2021 Aug;39(3):307-318. doi: 10.1016/j.ccl.2021.04.002. PMID: 34247746.

Daniel Dimitrov, Dénes Türei, Charlotte Boys, James S. Nagai, Ricardo O. Ramirez Flores, Hyojin Kim, Bence Szalai, Ivan G. Costa, Aurélien Dugourd, Alberto Valdeolivas, Julio Saez-Rodriguez

Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data

bioRxiv. 2021 doi: https://doi.org/10.1101/2021.05.21.445160

Roman David Bülow, Daniel Dimitrov, Peter Boor & Julio Saez-Rodriguez

How will artificial intelligence and bioinformatics change our understanding of IgA Nephropathy in the next decade?

Semin Immunopathol 43, 739–752 (2021). https://doi.org/10.1007/s00281-021-00847-y

Chiara Favero, Sol Carriazo, Leticia Cuarental, Raul Fernandez-Prado, Elena Gomá-Garcés, Maria Vanessa Perez-Gomez, Alberto Ortiz, Beatriz Fernandez-Fernandez and Maria Dolores Sanchez-Niño

Phosphate, Microbiota and CKD

Nutrients. 2021 Apr 13;13(4):1273. doi: 10.3390/nu13041273. PMID: 33924419; PMCID: PMC8070653.

Laura Giordano, Silvia Maria Mihaila, Hossein Eslami Amirabadi and Rosalinde Masereeuw

Microphysiological Systems to Recapitulate the Gut-Kidney Axis.

Trends in Biotechnology. 39.10.1016/j.tibtech.2020.12.001.

Griet Glorieux, Tessa Gryp and Alessandra Perna

Gut-Derived Metabolites and Their Role in Immune Dysfunction in Chronic Kidney Disease.

Toxins 2020, 12(4), 245; https://doi.org/10.3390/toxins12040245